| Family |
Essential Domain |
Domain Description |
True E-value |
Optional Domain |
Excluded Domain |
Note |
| ABI3/VP1 |
PF02362 |
B3 DNA binding domain |
0.01 |
|
AP2-EREBP, AUX-IAA,ARF, WRKY |
|
| AP2/EREBP |
PF00847 |
AP2 domain |
0.01 |
B3 |
|
|
| ARF |
PF06567 |
Auxin response factor |
1.10E-20 |
AUX/IAA,B3 |
|
|
| ARID |
PF01388 |
ARID/BRIGHT DNA binding domain |
0.00014 |
JUMONJI, HMG,PHD |
|
|
| AS2 |
PF03195 |
Protein of unknown function DUF260 |
3.90E-11 |
|
|
|
| AUX/IAA |
PF02309 |
AUX/IAA family |
2.90E-03 |
B3 |
ARF |
|
| BES1 |
PF05687 |
Plant protein of unknown function (DUF822) |
3.20E-13 |
|
|
|
| bHLH |
PF00010 |
Helix-loop-helix DNA-binding domain |
0.01 |
|
|
|
| bZIP |
PF00170 |
bZIP transcription factor |
0.01 |
|
HB |
|
| C2C2-CO-like |
PF06203 |
CCT motif |
0.0022 |
|
C2C2-GATA, ZIM |
|
| C2C2-Dof |
PF02701 |
Dof domain, zinc finger |
1.30E-32 |
|
|
|
| C2C2-GATA |
PF00320 |
GATA zinc finger |
3.50E-08 |
C2C2-CO-like, JUMONJI |
ZIM |
|
| C2C2-YABBY |
PF04690 |
YABBY protein |
9.20E-23 |
|
|
|
| C2H2 |
PF00096 |
Zinc finger, C2H2 type |
0.01 |
|
JUMONJI,PcG, PHD |
|
| C3H |
PF00642 |
Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
0.01 |
|
PHD,MADS |
|
| CAMTA |
PF03859 |
CG-1 domain |
7.10E-58 |
|
|
|
| CPP |
PF03638 |
Tesmin/TSO1-like CXC domain |
9.70E-03 |
PcG |
|
|
| E2F/DP |
PF02319 |
E2F/DP family winged-helix DNA-binding domain |
2.70E-03 |
|
|
|
| EIL |
PF04873 |
Ethylene insensitive 3 |
9.50E-243 |
HB |
|
|
| FHA |
PF00498 |
FHA domain |
0.0028 |
|
|
|
| GARP-ARR-B |
PF00072 |
Response regulator receiver domain |
0.0019 |
|
|
contain myb-like domain |
| GeBP |
PF04504 |
Protein of unknown function, DUF573 |
2.00E-06 |
|
|
|
| GIF |
PF05030 |
SSXT protein (N-terminal region) |
5.50E-06 |
|
|
|
| GRAS |
PF03514 |
GRAS family transcription factor |
8.10E-05 |
|
|
|
| HB |
PF00046 |
Homeobox domain |
0.01 |
PHD,bZIP |
EIL |
|
| HMG |
PF00505 |
HMG (high mobility group) box |
0.0014 |
|
ARID |
|
| HSF |
PF00447 |
HSF-type DNA-binding |
1.00E-25 |
|
|
|
| JUMONJI |
PF02373 |
JUMONJI C terminal domain |
7.30E-03 |
C2H2,PHD |
ARID, C2C2-GATA |
contain N or C terminal domain |
| PF02375 |
JUMONJI N terminal domain |
5.90E-06 |
| LFY |
PF01698 |
Floricaula / Leafy protein |
2.20E-274 |
|
|
|
| LIM |
PF00412 |
LIM domain |
0.0036 |
|
|
|
| MADS |
PF00319 |
SRF-type transcription factor (DNA-binding and dimerisation domain) |
0.00052 |
C3H |
|
|
| MYB |
PF00249 |
Myb-like DNA-binding domain |
0.001 |
|
SWIRM,PcG |
contain >2 MYB domain |
| MYB-related |
PF00249 |
กก |
0.001 |
|
GARP-ARR-B, GARP-G2-like, SWIRM |
contain 1 MYB domain |
| NAC |
PF02365 |
No apical meristem (NAM) protein |
9.00E-03 |
|
|
|
| Nin-like |
PF02042 |
RWP-RK |
1.40E-15 |
|
|
|
| PcG |
PF00856 |
SET domain |
0.01 |
MYB,C2H2,CPP |
PHD |
|
| PHD |
PF00628 |
PHD-finger |
0.01 |
C2H2,C3H,PcG |
Aflin,HB, ARID, TAZ, JUMONJI |
|
| PLATZ |
PF04640 |
Protein of unknown function, DUF597 |
1.70E-09 |
|
|
|
| S1Fa-like |
PF04689 |
DNA binding protein S1FA |
3.80E-40 |
|
|
|
| SBP |
PF03110 |
SBP domain |
3.00E-08 |
|
|
|
| SRS |
PF05142 |
Domain of unknown function (DUF702) |
1.60E-55 |
|
|
|
| TAZ |
PF02135 |
TAZ zinc finger |
3.80E-05 |
PHD |
|
|
| TCP |
PF03634 |
TCP family transcription factor |
2.40E-14 |
|
|
|
| Trihelix |
|
|
4.30E-102 |
self-built HMM profile from Arabidopsis seed sequences |
| TUB |
PF01167 |
Tub family |
0.0076 |
|
|
|
| WRKY |
PF03106 |
WRKY DNA -binding domain |
3.50E-17 |
|
|
|
| ZF-HD |
PF04770 |
ZF-HD protein dimerisation region |
0.00039 |
|
|
|
| ZIM |
PF06200 |
ZIM motif |
0.0014 |
C2C2-CO-like, C2C2-GATA |
|
|
