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ID (eg.gw1.I.7783.1)

New: The new version of poplar transcription factor database can be access at PlantTFDB v3.0 now. (2013-7-24)

The Database of Poplar Transcription Factors (DPTF) collected known and predicted transcription factors (TF) of the black cottonwood tree, Populus trichocarpa. DPTF currently contains 2,576 putative transcription factors gene models, distributed in 64 families. Details on how the transcription factors are collected can be found in the Help page.

    We made extensive annotations, including similarity searches against major databases (Uniprot, RefSeq, EMBL, TRANSFAC et al) and EST expression information extraction from UniGene clusters and microarray expression, to provide comprehensive information for the putative TFs. In addition, multiple alignment of the DNA-binding domain of each family, Neighbor-Joining phylogenetic tree of each family, the GO annotation, homolog with the Database of Arabidopsis Transcription Factors (DATF), the Database of Rice Transcription Factors (DRTF) are included.

    Publication for more information and for citing this work:
DPTF: A Database of Poplar Transcription Factors.
Zhu Q-H, Guo A-Y, Gao G, Zhong Y-F, Xu M, Huang M-R & Luo J-C*
Bioinformatics. 2007 23 (10):1307-1308

See Also:
PlantTFDB: Plant Transcription Factor Database (v3.0)

Browse by Family
(In parentheses is the number of putative TF Gene Models in Populus trichocarpa)
ABI3-VP1(108)Alfin(9)AP2-EREBP(212)ARF(37)ARID(13)
AS2(57)AUX-IAA(33)BBR-BPC(16)BES1(12)bHLH(148)
bZIP(85)C2C2-CO-like(39)C2C2-Dof(42)C2C2-GATA(32)C2C2-YABBY(13)
C2H2(81)C3H(78)CAMTA(7)CCAAT-Dr1(2)CCAAT-HAP2(11)
CCAAT-HAP3(19)CCAAT-HAP5(19)CPP(13)E2F-DP(10)EIL(6)
FHA(19)GARP-ARR-B(15)GARP-G2-like(67)GeBP(7)GIF(5)
GRAS(96)GRF(9)HB(106)HMG(12)HRT-like(1)
HSF(31)JUMONJI(20)LFY(1)LIM(21)LUG(6)
MADS(111)MBF1(3)MYB(216)MYB-related(84)NAC(172)
Nin-like(18)NZZ(2)PcG(45)PHD(86)PLATZ(20)
S1Fa-like(2)SAP(1)SBP(29)SRS(10)TAZ(7)
TCP(34)TLP(11)Trihelix(47)ULT(3)VOZ(4)
Whirly(2)WRKY(104)ZF-HD(25)ZIM(22) 
 
Browse by Chromosome
(In parentheses is the number of putative TF Gene Models in Populus trichocarpa)


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last updated: 2008-05-14